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Category Archives: genomics
In the pipeline – Part 1: ‘Plan, plan, and plan some more’
So you’ve decided it’s time to finally get around to starting that sequencing project. But before you aimlessly leap into it and generate terabytes of sequencing data, just STOP. It’s far too tempting to rush into sequencing projects for a … Continue reading
Posted in bioinformatics, evolution, genomics, howto, methods, population genetics, Uncategorized
Tagged assembly, bioinformatics, genetics, genomics, In the pipeline, population genetics, Sequencing
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Can small populations benefit from genetic rescue?
The core dogma of conservation biology is clear: small populations are bad for species’ persistence. If we observe a population of endangered vertebrates harboring abundant deleterious mutations but without any reduction in fitness, what is happening there? I would like … Continue reading
Ask GEVEs
Yikes. This year has been a doozy, and while we all know that the hand on the wall (if you have one of those old fashioned things) that strikes midnight on December 31st will not put out the dumpster fires … Continue reading
Genetic Rescue – Fitness and genomic consequences
As a PhD student studying the effects of genetic diversity overall and immunogenetic diversity specifically on survival and reproductive success in an endangered primate in captive and wild populations, I thought a lot about the potential effects of inbreeding and … Continue reading
Posted in conservation, genomics, hybridization
Tagged fish, fitness, Genetic rescue, hybridization, RADseq
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A genomic march of the penguins
It’s undeniable that penguins are a marine representative of the charismatic megafauna group. I have an affinity for stuff we need microscopes to see, BUT I agree that penguins are cute (just LOOK at these National Geographic photos…they’re even in … Continue reading
Serendipitous history in the microbial making
It’s been over 100 years since the Dutch Microbiologist Martinus Willem Beijerinck theorized that microbes could oxidize manganese to generate energy for growth. Last week, the first evidence for this theory was published, and you might be surprised about from … Continue reading
Posted in bioinformatics, ecology, genomics, microbiology, transcriptomics
Tagged cultivation, manganese oxidation, serindipity
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It’s the city life for me… or maybe not.
Michael Fitch wrote this post as part of Dr. Stacy Krueger-Hadfield’s Evolution course at the University of Alabama at Birmingham. He completed a B.S. in Biology from the UAB and is currently considering entering the Master’s program. Current interests… all over … Continue reading
Asteroids and Pandemics
For whatever reason, viral disease and pandemics have been on my mind, so it’s no surprise that a recent paper in Molecular Ecology caught my attention. It blends the existential dread of global pandemics with the increasing panic concerning the … Continue reading
The Virosphere’s Own Trojan Horse
Melissa Walker wrote this post as a part of Dr. Stacy Krueger-Hadfield’s Science Communication course at the University of Alabama at Birmingham. Melissa’s research focuses on the interactions between freshwater biofilms and the viruses that infect them. She is currently … Continue reading
Posted in blogging, evolution, genomics, microbiology, natural history, Science Communication
Tagged Blogging, Evolution, host-phage, phage, scicomm, virosphere, virus
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